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LOC109048446 carbohydrate sulfotransferase 11-like [ Cyprinus carpio (common carp) ]

Gene ID: 109048446, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109048446
Gene description
carbohydrate sulfotransferase 11-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109048446 in Genome Data Viewer
Location:
chromosome: B23
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B23 NC_056619.1 (20718424..20733636)
100 previous assembly common carp genome (GCF_000951615.1) 45 NC_031741.1 (12026909..12029794, complement)

Chromosome B23 - NC_056619.1Genomic Context describing neighboring genes Neighboring gene plexin A1a Neighboring gene uncharacterized LOC109083764 Neighboring gene solute carrier family 41 member 1-like Neighboring gene uncharacterized LOC109058594

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056619.1 Reference ASM1834038v1 Primary Assembly

    Range
    20718424..20733636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042750080.1 → XP_042606014.1  carbohydrate sulfotransferase 11-like

    UniProtKB/TrEMBL
    A0A8C1YVT8, A0A8C2DYM1, A0A9J8C039
    Conserved Domains (1) summary
    pfam03567
    Location:101 → 331
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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