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Tsp_00718 ubiquitin fusion degradation protein 1-like protein [ Trichinella spiralis ]

Gene ID: 10903899, updated on 25-Jan-2024

Summary

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Gene symbol
Tsp_00718
Gene description
ubiquitin fusion degradation protein 1-like protein
Locus tag
Tsp_00718
Gene type
protein coding
RNA name
ubiquitin fusion degradation protein 1-like protein
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
16

NW_003526943.1Genomic Context describing neighboring genes Neighboring gene putative ribosomal RNA large subunit methyltransferase J Neighboring gene hypothetical protein Neighboring gene RMD5 protein Neighboring gene triacylglycerol lipase superfamily

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526943.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Arp2/3 protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of VCP-NPL4-UFD1 AAA ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ubiquitin fusion degradation protein 1-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526943.1 Reference assembly

    Range
    2620727..2625251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003376414.1 → XP_003376462.1  ubiquitin fusion degradation protein 1-like protein [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003376462.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5SAE0
    Conserved Domains (2) summary
    pfam03152
    Location:211 → 386
    UFD1; Ubiquitin fusion degradation protein UFD1
    pfam04699
    Location:50 → 186
    P16-Arc; ARP2/3 complex 16 kDa subunit (p16-Arc)
Nucleotide Protein
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