U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109021158 probable beta-1,4-xylosyltransferase IRX9H [ Juglans regia (English walnut) ]

Gene ID: 109021158, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109021158
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Locus tag
F2P56_013377
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109021158 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 6 NC_049906.1 (33931431..33938130, complement)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017437830.1 (621..7278, complement)

Chromosome 6 - NC_049906.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 86-like Neighboring gene pentatricopeptide repeat-containing protein At3g16610 Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1 Neighboring gene 30S ribosomal protein S9, mitochondrial Neighboring gene stemmadenine O-acetyltransferase-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049906.1 Reference Walnut 2.0 Primary Assembly

    Range
    33931431..33938130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019003729.2 → XP_018859274.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A2I4HT07
    Conserved Domains (1) summary
    cd00218
    Location:145 → 374
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases