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LOC109018843 polygalacturonase QRT2-like [ Juglans regia (English walnut) ]

Gene ID: 109018843, updated on 22-Oct-2023

Summary

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Gene symbol
LOC109018843
Gene description
polygalacturonase QRT2-like
Locus tag
F2P56_031559
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC109018843 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 14 NC_049914.1 (562154..566014)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017436234.1 (18785..22610)

Chromosome 14 - NC_049914.1Genomic Context describing neighboring genes Neighboring gene cellulose synthase A catalytic subunit 3 [UDP-forming] Neighboring gene carotenoid 9,10(9',10')-cleavage dioxygenase 1 Neighboring gene cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like Neighboring gene tRNA-dihydrouridine(20/20a) synthase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anther dehiscence IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fruit dehiscence IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase QRT2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049914.1 Reference Walnut 2.0 Primary Assembly

    Range
    562154..566014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019001032.2 → XP_018856577.1  polygalacturonase QRT2-like

    UniProtKB/TrEMBL
    A0A2I4HKG8
    Conserved Domains (1) summary
    PLN02218
    Location:94 → 469
    PLN02218; polygalacturonase ADPG
Nucleotide Protein
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