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LOC109012316 beta-galactosidase [ Juglans regia (English walnut) ]

Gene ID: 109012316, updated on 22-Oct-2023

Summary

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Gene symbol
LOC109012316
Gene description
beta-galactosidase
Locus tag
F2P56_031662
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC109012316 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 14 NC_049914.1 (1248507..1262467)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017389834.1 (419596..433558, complement)

Chromosome 14 - NC_049914.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 5.4-like Neighboring gene DNA-directed RNA polymerase V subunit 1 Neighboring gene calcium load-activated calcium channel homolog Neighboring gene uncharacterized LOC109012317 Neighboring gene protein LATERAL ROOT PRIMORDIUM 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lactose catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of beta-galactosidase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049914.1 Reference Walnut 2.0 Primary Assembly

    Range
    1248507..1262467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018993881.2 → XP_018849426.2  beta-galactosidase

    UniProtKB/TrEMBL
    A0A2I4GZT8
    Conserved Domains (1) summary
    PRK09525
    Location:93 → 1104
    lacZ; beta-galactosidase
Nucleotide Protein
Heading Accession and Version

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