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LOC109007577 soluble starch synthase 1, chloroplastic/amyloplastic [ Juglans regia (English walnut) ]

Gene ID: 109007577, updated on 18-Sep-2024

Summary

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Gene symbol
LOC109007577
Gene description
soluble starch synthase 1, chloroplastic/amyloplastic
Locus tag
F2P56_035350
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Also known as
AT1G02020
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Genomic context

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See LOC109007577 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 16 NC_049916.1 (6964425..6986010, complement)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017389425.1 (1667868..1689457, complement)

Chromosome 16 - NC_049916.1Genomic Context describing neighboring genes Neighboring gene PP2A regulatory subunit TAP46-like Neighboring gene phytolongin Phyl2.2-like Neighboring gene protein IQ-DOMAIN 1-like Neighboring gene structural maintenance of chromosomes flexible hinge domain-containing protein GMI1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets. Zeng L, et al. New Phytol, 2017 May. PMID 28294342
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049916.1 Reference Walnut 2.0 Primary Assembly

    Range
    6964425..6986010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035686492.1 → XP_035542385.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X2

    UniProtKB/TrEMBL
    A0A6P9E2T4, A0A833TN69
    Conserved Domains (1) summary
    cd03791
    Location:129 → 629
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins

  2. XM_018987308.2 → XP_018842853.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A2I4GG26, A0A833TN69
Nucleotide Protein
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