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Tsp_03029 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Trichinella spiralis ]

Gene ID: 10900305, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_03029
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
Locus tag
Tsp_03029
Gene type
protein coding
RNA name
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
18

NW_003526941.1Genomic Context describing neighboring genes Neighboring gene putative acetate--CoA ligase Neighboring gene serine/threonine-protein kinase/endoribonuclease ire-1 Neighboring gene hypothetical protein Neighboring gene secreted phosphoprotein 24

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526941.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526941.1 Reference assembly

    Range
    2381615..2390932 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003379317.1 → XP_003379365.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003379365.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5S2G4
    Conserved Domains (5) summary
    sd00017
    Location:947 → 967
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00106
    Location:61 → 253
    adh_short; short chain dehydrogenase
    pfam13465
    Location:960 → 982
    zf-H2C2_2; Zinc-finger double domain
    pfam15011
    Location:728 → 875
    CK2S; Casein Kinase 2 substrate
    cl21454
    Location:60 → 320
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
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