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LOC109002804 hydroxyproline O-galactosyltransferase HPGT3-like [ Juglans regia (English walnut) ]

Gene ID: 109002804, updated on 22-Oct-2023

Summary

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Gene symbol
LOC109002804
Gene description
hydroxyproline O-galactosyltransferase HPGT3-like
Locus tag
F2P56_017496
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC109002804 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 8 NC_049908.1 (1057515..1062811, complement)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017389032.1 (62802..67906)

Chromosome 8 - NC_049908.1Genomic Context describing neighboring genes Neighboring gene heparanase-like protein 3 Neighboring gene cysteine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene ER membrane protein complex subunit 7 homolog Neighboring gene thiamine-repressible mitochondrial transport protein THI74-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049908.1 Reference Walnut 2.0 Primary Assembly

    Range
    1057515..1062811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018980708.2 → XP_018836253.1  hydroxyproline O-galactosyltransferase HPGT3-like

    UniProtKB/TrEMBL
    A0A2I4FX81
    Conserved Domains (1) summary
    PLN03193
    Location:16 → 334
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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