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LOC109002704 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [ Juglans regia (English walnut) ]

Gene ID: 109002704, updated on 22-Oct-2023

Summary

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Gene symbol
LOC109002704
Gene description
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4
Locus tag
F2P56_026773
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC109002704 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 12 NC_049912.1 (5740759..5743765)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017389023.1 (257815..260822, complement)

Chromosome 12 - NC_049912.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109002706 Neighboring gene protein ABIL1 Neighboring gene uncharacterized LOC109002703 Neighboring gene uncharacterized LOC108980674

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049912.1 Reference Walnut 2.0 Primary Assembly

    Range
    5740759..5743765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018980555.2 → XP_018836100.1  UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 isoform X1

    UniProtKB/TrEMBL
    A0A2I4FWT4
    Conserved Domains (1) summary
    pfam03407
    Location:118 → 337
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase

  2. XM_018980556.2 → XP_018836101.1  UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 isoform X2

    UniProtKB/TrEMBL
    A0A2I4FWS5
    Conserved Domains (1) summary
    pfam03407
    Location:118 → 329
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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