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LOC109001692 callose synthase 3-like [ Juglans regia (English walnut) ]

Gene ID: 109001692, updated on 22-Oct-2023

Summary

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Gene symbol
LOC109001692
Gene description
callose synthase 3-like
Locus tag
F2P56_033460
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC109001692 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
44
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 14 NC_049914.1 (27461205..27505045)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017388965.1 (895984..939697, complement)

Chromosome 14 - NC_049914.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 14-like Neighboring gene delta(12)-acyl-lipid-desaturase-like Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC109001610

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049914.1 Reference Walnut 2.0 Primary Assembly

    Range
    27461205..27505045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035685069.1 → XP_035540962.1  callose synthase 3-like isoform X1

    UniProtKB/TrEMBL
    A0A2I4FSJ6, A0A833THC7
    Conserved Domains (3) summary
    pfam02364
    Location:1055 → 1812
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:54 → 177
    Vta1; Vta1 like
    pfam14288
    Location:325 → 438
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_018979076.2 → XP_018834621.1  callose synthase 3-like isoform X1

    UniProtKB/TrEMBL
    A0A2I4FSJ6, A0A833THC7
    Conserved Domains (3) summary
    pfam02364
    Location:1055 → 1812
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:54 → 177
    Vta1; Vta1 like
    pfam14288
    Location:325 → 438
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  3. XM_035685070.1 → XP_035540963.1  callose synthase 3-like isoform X2

    UniProtKB/TrEMBL
    A0A6P9E9C1, A0A833THC7
    Conserved Domains (2) summary
    pfam02364
    Location:885 → 1642
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:155 → 268
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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