U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109001689 callose synthase 9 [ Juglans regia (English walnut) ]

Gene ID: 109001689, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109001689
Gene description
callose synthase 9
Locus tag
F2P56_033466
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109001689 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
53
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 14 NC_049914.1 (27530446..27620492)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017388965.1 (780466..870502, complement)

Chromosome 14 - NC_049914.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC109001610 Neighboring gene uncharacterized LOC109001690 Neighboring gene peroxidase A2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
callose synthase 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049914.1 Reference Walnut 2.0 Primary Assembly

    Range
    27530446..27620492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018979071.2 → XP_018834616.1  callose synthase 9

    UniProtKB/TrEMBL
    A0A2I4FSJ2
    Conserved Domains (2) summary
    pfam02364
    Location:1027 → 1769
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:337 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_018979072.2 → XP_018834617.1  callose synthase 9

    UniProtKB/TrEMBL
    A0A2I4FSJ2
    Conserved Domains (2) summary
    pfam02364
    Location:1027 → 1769
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:337 → 446
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

RNA

  1. XR_004798301.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases