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LOC108997329 probable beta-1,4-xylosyltransferase IRX10 [ Juglans regia (English walnut) ]

Gene ID: 108997329, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108997329
Gene description
probable beta-1,4-xylosyltransferase IRX10
Locus tag
F2P56_029687
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC108997329 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 13 NC_049913.1 (8106752..8110742, complement)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017443603.1 (1004505..1008483)

Chromosome 13 - NC_049913.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic-like Neighboring gene transaldolase-like Neighboring gene phosphatidylinositol transfer protein 3-like Neighboring gene cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049913.1 Reference Walnut 2.0 Primary Assembly

    Range
    8106752..8110742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018973534.2 → XP_018829079.1  probable beta-1,4-xylosyltransferase IRX10

    UniProtKB/TrEMBL
    A0A2I4FBQ1, A0A833X8B4
Nucleotide Protein
Heading Accession and Version

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