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LOC108997322 exopolygalacturonase [ Juglans regia (English walnut) ]

Gene ID: 108997322, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108997322
Gene description
exopolygalacturonase
Locus tag
F2P56_029609
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC108997322 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 13 NC_049913.1 (7523378..7526558, complement)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017443603.1 (1540114..1543319)

Chromosome 13 - NC_049913.1Genomic Context describing neighboring genes Neighboring gene CMP-sialic acid transporter 4-like Neighboring gene cysteine protease XCP1-like Neighboring gene damage-control phosphatase At2g17340-like Neighboring gene uncharacterized LOC108997334 Neighboring gene pentatricopeptide repeat-containing protein At2g03880, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049913.1 Reference Walnut 2.0 Primary Assembly

    Range
    7523378..7526558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018973530.2 → XP_018829075.1  exopolygalacturonase

    UniProtKB/TrEMBL
    A0A2I4FBN9
    Conserved Domains (1) summary
    PLN02188
    Location:48 → 427
    PLN02188; polygalacturonase/glycoside hydrolase family protein
Nucleotide Protein
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