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LOC108994086 mitochondrial carnitine/acylcarnitine carrier-like protein [ Juglans regia (English walnut) ]

Gene ID: 108994086, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108994086
Gene description
mitochondrial carnitine/acylcarnitine carrier-like protein
Locus tag
F2P56_004378
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC108994086 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 2 NC_049902.1 (25050659..25055192)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017443560.1 (2163088..2167601)

Chromosome 2 - NC_049902.1Genomic Context describing neighboring genes Neighboring gene acetylornithine deacetylase Neighboring gene uncharacterized LOC108994079 Neighboring gene probable phosphopantothenoylcysteine decarboxylase Neighboring gene uncharacterized LOC108994032

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ornithine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049902.1 Reference Walnut 2.0 Primary Assembly

    Range
    25050659..25055192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018969176.2 → XP_018824721.2  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    A0A2I4EZA4
    Conserved Domains (1) summary
    pfam00153
    Location:206 → 297
    Mito_carr; Mitochondrial carrier protein

  2. XM_035687858.1 → XP_035543751.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    A0A2I4EZA4
    Conserved Domains (1) summary
    pfam00153
    Location:206 → 297
    Mito_carr; Mitochondrial carrier protein

  3. XM_018969175.2 → XP_018824720.2  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    A0A2I4EZA4
    Conserved Domains (1) summary
    pfam00153
    Location:206 → 297
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

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