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LOC108993725 beta-1,6-galactosyltransferase GALT31A-like [ Juglans regia (English walnut) ]

Gene ID: 108993725, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108993725
Gene description
beta-1,6-galactosyltransferase GALT31A-like
Locus tag
F2P56_020339
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC108993725 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 9 NC_049909.1 (18369599..18374842)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017443554.1 (24195..29622)

Chromosome 9 - NC_049909.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109001924 Neighboring gene subtilisin-like protease SBT3.5 Neighboring gene uncharacterized LOC108993769 Neighboring gene granule-bound starch synthase 1, chloroplastic/amyloplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,6-galactosyltransferase GALT31A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049909.1 Reference Walnut 2.0 Primary Assembly

    Range
    18369599..18374842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018968734.2 → XP_018824279.2  beta-1,6-galactosyltransferase GALT31A-like isoform X1

    UniProtKB/TrEMBL
    A0A2I4EXZ9, A0A833X5G8
    Conserved Domains (1) summary
    PLN03193
    Location:11 → 403
    PLN03193; beta-1,3-galactosyltransferase; Provisional

  2. XM_018968735.2 → XP_018824280.2  beta-1,6-galactosyltransferase GALT31A-like isoform X2

    UniProtKB/TrEMBL
    A0A2I4EY04, A0A833X5G8
    Conserved Domains (1) summary
    PLN03193
    Location:28 → 395
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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