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LOC108988325 cellulose synthase-like protein D3 [ Juglans regia (English walnut) ]

Gene ID: 108988325, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108988325
Gene description
cellulose synthase-like protein D3
Locus tag
F2P56_031027
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC108988325 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 13 NC_049913.1 (34377783..34383387)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017443020.1 (815183..820760, complement)

Chromosome 13 - NC_049913.1Genomic Context describing neighboring genes Neighboring gene TOM1-like protein 1 Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene ribosomal L1 domain-containing protein 1-like Neighboring gene 4-coumarate--CoA ligase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049913.1 Reference Walnut 2.0 Primary Assembly

    Range
    34377783..34383387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018961560.2 → XP_018817105.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A2I4ECI4
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1148
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version

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