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LOC108986572 callose synthase 10 [ Juglans regia (English walnut) ]

Gene ID: 108986572, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108986572
Gene description
callose synthase 10
Locus tag
F2P56_019897
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC108986572 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
51
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 9 NC_049909.1 (13510531..13583702, complement)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017442839.1 (252425..325531)

Chromosome 9 - NC_049909.1Genomic Context describing neighboring genes Neighboring gene lysine-specific demethylase REF6-like Neighboring gene zinc finger CCCH domain-containing protein 43-like Neighboring gene GDSL esterase/lipase At3g48460 Neighboring gene E3 ubiquitin-protein ligase AIRP2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049909.1 Reference Walnut 2.0 Primary Assembly

    Range
    13510531..13583702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018959222.2 → XP_018814767.1  callose synthase 10

    UniProtKB/TrEMBL
    A0A2I4E5T8
    Conserved Domains (2) summary
    pfam02364
    Location:1021 → 1761
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:340 → 450
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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