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LOC108985118 probable galacturonosyltransferase 4 [ Juglans regia (English walnut) ]

Gene ID: 108985118, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108985118
Gene description
probable galacturonosyltransferase 4
Locus tag
F2P56_009303
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC108985118 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 4 NC_049904.1 (25308592..25313553, complement)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017442630.1 (7496..12089)

Chromosome 4 - NC_049904.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase WAV3-like Neighboring gene APO protein 1, chloroplastic-like Neighboring gene uncharacterized LOC118348239 Neighboring gene chaperone protein dnaJ 11, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049904.1 Reference Walnut 2.0 Primary Assembly

    Range
    25308592..25313553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018957289.2 → XP_018812834.2  probable galacturonosyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2I4E0A8
    Conserved Domains (1) summary
    PLN02829
    Location:16 → 663
    PLN02829; Probable galacturonosyltransferase

  2. XM_018957290.2 → XP_018812835.2  probable galacturonosyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A2I4E0B1
    Conserved Domains (1) summary
    PLN02829
    Location:16 → 662
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein
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