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LOC108984915 beta-1,2-xylosyltransferase [ Juglans regia (English walnut) ]

Gene ID: 108984915, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108984915
Gene description
beta-1,2-xylosyltransferase
Locus tag
F2P56_005524
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC108984915 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 2 NC_049902.1 (36857403..36861614)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017388887.1 (1282170..1286156)

Chromosome 2 - NC_049902.1Genomic Context describing neighboring genes Neighboring gene exopolygalacturonase-like Neighboring gene pirin-like protein Neighboring gene uncharacterized LOC108983423 Neighboring gene 40S ribosomal protein S8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,2-xylosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049902.1 Reference Walnut 2.0 Primary Assembly

    Range
    36857403..36861614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018957017.2 → XP_018812562.1  beta-1,2-xylosyltransferase

    UniProtKB/TrEMBL
    A0A2I4DZJ3
    Conserved Domains (1) summary
    pfam04577
    Location:244 → 493
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
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