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LOC108983458 probable xyloglucan endotransglucosylase/hydrolase protein 32 [ Juglans regia (English walnut) ]

Gene ID: 108983458, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108983458
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 32
Locus tag
F2P56_007561
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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See LOC108983458 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 3 NC_049903.1 (25350590..25352449, complement)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017442034.1 (13688..15552)

Chromosome 3 - NC_049903.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RFWD3 Neighboring gene uncharacterized LOC109007437 Neighboring gene thioredoxin-like 3-3 Neighboring gene S-adenosylmethionine synthase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 32

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049903.1 Reference Walnut 2.0 Primary Assembly

    Range
    25350590..25352449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018955092.2 → XP_018810637.1  probable xyloglucan endotransglucosylase/hydrolase protein 32

    UniProtKB/TrEMBL
    A0A2I4DU19, A0A833XUZ1
    Conserved Domains (1) summary
    cl22861
    Location:38 → 293
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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