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unm_hu7910 un-named hu7910 [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108929627, updated on 14-Mar-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
See related
Ensembl:ENSSFOG00015015190
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
Also known as
asph
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
34
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 9 NC_041814.1 (25293445..25347161)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371622.1 (900574..955924, complement)

Chromosome 9 - NC_041814.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) Neighboring gene sodium/potassium transporting ATPase interacting 3 Neighboring gene uncharacterized LOC108929628 Neighboring gene clavesin 1 Neighboring gene chromodomain helicase DNA binding protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
aspartate beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041814.1 Reference fSclFor1.1 Primary Assembly

    Range
    25293445..25347161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018744295.2 → XP_018599811.2  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (5) summary
    PHA02664
    Location:393 → 499
    PHA02664; hypothetical protein; Provisional
    pfam05279
    Location:88 → 237
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:597 → 812
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:686 → 712
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:855 → 1009
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_018744293.2 → XP_018599809.2  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (4) summary
    pfam05279
    Location:88 → 237
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:597 → 812
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:686 → 712
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:855 → 1009
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_018744296.2 → XP_018599812.2  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (4) summary
    pfam05279
    Location:88 → 237
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:596 → 811
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:685 → 711
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:854 → 1008
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_018744291.2 → XP_018599807.2  aspartyl/asparaginyl beta-hydroxylase isoform X1

    UniProtKB/TrEMBL
    A0A8C9S380
    Related
    ENSSFOP00015023624.2, ENSSFOT00015023883.2
    Conserved Domains (5) summary
    PHA02664
    Location:393 → 499
    PHA02664; hypothetical protein; Provisional
    pfam05279
    Location:88 → 237
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:598 → 813
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:687 → 713
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:856 → 1010
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  5. XM_018744292.2 → XP_018599808.2  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (4) summary
    pfam05279
    Location:88 → 237
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:597 → 812
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:686 → 712
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:855 → 1009
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  6. XM_029255196.1 → XP_029111029.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    Conserved Domains (4) summary
    pfam05279
    Location:88 → 237
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:580 → 795
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:669 → 695
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:838 → 992
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  7. XM_018744297.2 → XP_018599813.2  aspartyl/asparaginyl beta-hydroxylase isoform X6

    UniProtKB/TrEMBL
    A0A8C9V4G5
    Related
    ENSSFOP00015023675.2, ENSSFOT00015023935.2
    Conserved Domains (4) summary
    pfam05279
    Location:88 → 237
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:584 → 799
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:673 → 699
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:842 → 996
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  8. XM_029255197.1 → XP_029111030.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    UniProtKB/TrEMBL
    A0A8C9W9N3
    Related
    ENSSFOP00015070691.1, ENSSFOT00015048772.1
    Conserved Domains (5) summary
    PHA02664
    Location:328 → 434
    PHA02664; hypothetical protein; Provisional
    pfam05279
    Location:23 → 172
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:533 → 748
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:622 → 648
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:791 → 945
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
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