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LOC108926150 kin of IRRE-like protein 1 [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108926150, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108926150
Gene description
kin of IRRE-like protein 1
See related
Ensembl:ENSSFOG00015016073
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
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Genomic context

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See LOC108926150 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 3 NC_041808.1 (27530798..27550960)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371570.1 (2782025..2804437, complement)

Chromosome 3 - NC_041808.1Genomic Context describing neighboring genes Neighboring gene type I phosphatidylinositol 4,5-bisphosphate 4-phosphatase-A-like Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041808.1 Reference fSclFor1.1 Primary Assembly

    Range
    27530798..27550960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029250438.1 → XP_029106271.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9U3K2, A0A8C9U7E7
    Related
    ENSSFOP00015060891.1, ENSSFOT00015054686.1
    Conserved Domains (4) summary
    pfam13895
    Location:224 → 277
    Ig_2; Immunoglobulin domain
    pfam07679
    Location:20 → 114
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cl11960
    Location:389 → 484
    Ig; Immunoglobulin domain

  2. XM_018738679.2 → XP_018594195.2  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C9U7E7
    Related
    ENSSFOP00015058774.1, ENSSFOT00015070852.1
    Conserved Domains (4) summary
    pfam13895
    Location:224 → 277
    Ig_2; Immunoglobulin domain
    pfam07679
    Location:20 → 114
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cl11960
    Location:389 → 484
    Ig; Immunoglobulin domain
Nucleotide Protein
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