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LOC108921427 procollagen galactosyltransferase 2-like [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108921427, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108921427
Gene description
procollagen galactosyltransferase 2-like
See related
Ensembl:ENSSFOG00015012396
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
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Genomic context

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See LOC108921427 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
12
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 25 NC_041830.1 (16844426..16850204)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371526.1 (1608184..1616708, complement)

Chromosome 25 - NC_041830.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C1orf21 homolog Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene TSEN15 tRNA splicing endonuclease subunit Neighboring gene uncharacterized LOC114909500 Neighboring gene alpha/beta hydrolase domain-containing protein 17A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041830.1 Reference fSclFor1.1 Primary Assembly

    Range
    16844426..16850204
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029249382.1 → XP_029105215.1  procollagen galactosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A8C9TBH8
    Related
    ENSSFOP00015047292.1, ENSSFOT00015051475.1
    Conserved Domains (2) summary
    cd00761
    Location:2 → 128
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl01298
    Location:285 → 470
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
Nucleotide Protein
Heading Accession and Version

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