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LOC108920125 VIP36-like protein [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108920125, updated on 19-Jun-2024

Summary

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Gene symbol
LOC108920125
Gene description
VIP36-like protein
See related
Ensembl:ENSSFOG00015013563
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
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Genomic context

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See LOC108920125 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
8
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 21 NC_041826.1 (23934292..23943326, complement)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017372381.1 (357175..366377, complement)

Chromosome 21 - NC_041826.1Genomic Context describing neighboring genes Neighboring gene PH and SEC7 domain-containing protein 1-like Neighboring gene paired box protein Pax-8-like Neighboring gene potassium channel subfamily T member 1-like Neighboring gene rap guanine nucleotide exchange factor 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041826.1 Reference fSclFor1.1 Primary Assembly

    Range
    23934292..23943326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029247096.1 → XP_029102929.1  VIP36-like protein

    UniProtKB/TrEMBL
    A0A0P7U1Y8
    Related
    ENSSFOP00015021090.2, ENSSFOT00015021325.2
    Conserved Domains (1) summary
    cl14058
    Location:30 → 279
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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