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dysf dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) [ Lates calcarifer (barramundi perch) ]

Gene ID: 108902789, updated on 10-Oct-2024

Summary

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Gene symbol
dysf
Gene description
dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)
See related
EnsemblRapid:ENSLCAG00010019901
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See dysf in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
58
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG14 NC_066846.1 (13255894..13327391, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366447.1 (343144..412915)

Linkage Group LG14 - NC_066846.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108902786 Neighboring gene cytochrome P450 26B1 Neighboring gene uncharacterized LOC108902788 Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene transfer RNA proline (anticodon CGG) Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene ladderlectin Neighboring gene ladderlectin Neighboring gene uncharacterized LOC108902779

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066846.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    13255894..13327391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051075427.1 → XP_050931384.1  dysferlin isoform X2

    UniProtKB/TrEMBL
    A0AAJ8BGC1

  2. XM_051075434.1 → XP_050931391.1  dysferlin isoform X11

    UniProtKB/TrEMBL
    A0AAJ8DTX9
    Related
    ENSLCAP00010043098.2, ENSLCAT00010044158.2

  3. XM_051075432.1 → XP_050931389.1  dysferlin isoform X9

    UniProtKB/TrEMBL
    A0AAJ8BGL1
    Related
    ENSLCAP00010043079.1, ENSLCAT00010044139.2

  4. XM_051075429.1 → XP_050931386.1  dysferlin isoform X4

    UniProtKB/TrEMBL
    A0AAJ8BFM8
    Related
    ENSLCAP00010061647.1, ENSLCAT00010072107.1

  5. XM_051075430.1 → XP_050931387.1  dysferlin isoform X5

    UniProtKB/TrEMBL
    A0AAJ8BF63

  6. XM_018704783.2 → XP_018560299.1  dysferlin isoform X7

    UniProtKB/TrEMBL
    A0A4W6EUS2, A0AAJ7QN65

  7. XM_018704782.2 → XP_018560298.1  dysferlin isoform X1

    UniProtKB/TrEMBL
    A0A4W6EUS2, A0AAJ7QMZ2

  8. XM_051075433.1 → XP_050931390.1  dysferlin isoform X10

    UniProtKB/TrEMBL
    A0AAJ8BF39
    Related
    ENSLCAP00010043170.2, ENSLCAT00010044230.2

  9. XM_051075431.1 → XP_050931388.1  dysferlin isoform X6

    UniProtKB/TrEMBL
    A0AAJ8BGU4
    Related
    ENSLCAP00010061996.1, ENSLCAT00010082386.1

  10. XM_051075428.1 → XP_050931385.1  dysferlin isoform X3

    UniProtKB/TrEMBL
    A0AAJ8BE63

  11. XM_051075435.1 → XP_050931392.1  dysferlin isoform X12

    UniProtKB/TrEMBL
    A0AAJ8DUC1

  12. XM_018704784.2 → XP_018560300.1  dysferlin isoform X8

    UniProtKB/TrEMBL
    A0A4W6EYJ7, A0AAJ7QNE5
    Related
    ENSLCAP00010077702.1, ENSLCAT00010089846.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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