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plcl1 phospholipase C like 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108902510, updated on 1-Aug-2024

Summary

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Gene symbol
plcl1
Gene description
phospholipase C like 1
See related
EnsemblRapid:ENSLCAG00010028604
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See plcl1 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
12
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG1 NC_066833.1 (3646161..3735083, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366391.1 (62884..151941)

Linkage Group LG1 - NC_066833.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B11 Neighboring gene SATB homeobox 2 Neighboring gene MOB-like protein phocein Neighboring gene raftlin family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: inactive phospholipase C-like protein 1
Names
inactive phospholipase C-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066833.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    3646161..3735083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018704401.2 → XP_018559917.1  LOW QUALITY PROTEIN: inactive phospholipase C-like protein 1

    UniProtKB/TrEMBL
    A0AAJ7QMV0
    Related
    ENSLCAP00010061749.1, ENSLCAT00010073291.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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