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gal3st2 galactose-3-O-sulfotransferase 2 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108900565, updated on 1-Aug-2024

Summary

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Gene symbol
gal3st2
Gene description
galactose-3-O-sulfotransferase 2
See related
EnsemblRapid:ENSLCAG00010006659
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
zebrafish all
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Genomic context

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See gal3st2 in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
4
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG21 NC_066853.1 (25321849..25340206)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363841.1 (3338837..3355095, complement)

Linkage Group LG21 - NC_066853.1Genomic Context describing neighboring genes Neighboring gene interleukin 4 induced 1 Neighboring gene potassium inwardly rectifying channel subfamily J member 13 Neighboring gene FAT atypical cadherin 3a Neighboring gene melatonin receptor type 1Ba

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramide sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactose-3-O-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066853.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    25321849..25340206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018701690.2 → XP_018557206.1  galactose-3-O-sulfotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A4W6CNX0
    Related
    ENSLCAP00010014025.1, ENSLCAT00010014327.2

  2. XM_018701698.2 → XP_018557214.1  galactose-3-O-sulfotransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0AAJ7QIS7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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