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pigm phosphatidylinositol glycan anchor biosynthesis, class M [ Lates calcarifer (barramundi perch) ]

Gene ID: 108898257, updated on 1-Aug-2024

Summary

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Gene symbol
pigm
Gene description
phosphatidylinositol glycan anchor biosynthesis, class M
See related
EnsemblRapid:ENSLCAG00010026437
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See pigm in Genome Data Viewer
Location:
chromosome: LG24
Exon count:
8
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG24 NC_066856.1 (1501389..1504481, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365950.1 (499453..502561, complement)

Linkage Group LG24 - NC_066856.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SAM domain-containing protein 6 Neighboring gene uncharacterized LOC108898270 Neighboring gene leukocyte elastase inhibitor-like Neighboring gene cystatin-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-mannosyltransferase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066856.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    1501389..1504481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018698189.2 → XP_018553705.2  GPI mannosyltransferase 1

    UniProtKB/TrEMBL
    A0A4W6FZC8, A0AAJ7QE03
    Related
    ENSLCAP00010056637.1, ENSLCAT00010058182.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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