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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108897476, updated on 1-Aug-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
EnsemblRapid:ENSLCAG00010019709
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
19
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG18 NC_066850.1 (17474589..17590888)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365869.1 (2039531..2155853)

Linkage Group LG18 - NC_066850.1Genomic Context describing neighboring genes Neighboring gene importin 8 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene G-protein coupled receptor 22 Neighboring gene component of oligomeric golgi complex 5 Neighboring gene NADH:ubiquinone oxidoreductase subunit A5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein O-mannosyl-transferase TMTC1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066850.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    17474589..17590888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018697122.2 → XP_018552638.1  LOW QUALITY PROTEIN: protein O-mannosyl-transferase TMTC1

    UniProtKB/TrEMBL
    A0A4W6EVY4, A0AAJ7QCI2
    Related
    ENSLCAP00010042164.1, ENSLCAT00010043211.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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