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LOC108897163 cobalamin trafficking protein CblD [ Lates calcarifer (barramundi perch) ]

Gene ID: 108897163, updated on 10-Apr-2024

Summary

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Gene symbol
LOC108897163
Gene description
cobalamin trafficking protein CblD
See related
EnsemblRapid:ENSLCAG00010027261
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
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Genomic context

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See LOC108897163 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
9
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG1 NC_066833.1 (24191776..24198505, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365852.1 (115952..122699, complement)

Linkage Group LG1 - NC_066833.1Genomic Context describing neighboring genes Neighboring gene inactive dipeptidyl peptidase 10 Neighboring gene LY6/PLAUR domain containing 6 Neighboring gene rho-related GTP-binding protein RhoE Neighboring gene N-myc (and STAT) interactor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cobalamin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cobalamin trafficking protein CblD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066833.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    24191776..24198505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051072613.1 → XP_050928570.1  cobalamin trafficking protein CblD isoform X2

    UniProtKB/TrEMBL
    A0A4W6G3W5

  2. XM_018696630.2 → XP_018552146.1  cobalamin trafficking protein CblD isoform X2

    UniProtKB/TrEMBL
    A0A4W6G3W5
    Related
    ENSLCAP00010058443.1, ENSLCAT00010060041.2

  3. XM_051072609.1 → XP_050928566.1  cobalamin trafficking protein CblD isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases