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capn3b calpain 3b [ Lates calcarifer (barramundi perch) ]

Gene ID: 108895964, updated on 1-Aug-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
EnsemblRapid:ENSLCAG00010021080
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: LG7_1
Exon count:
23
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG7_1 NC_066839.1 (8342741..8354784)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365696.1 (318515..330610)

Linkage Group LG7_1 - NC_066839.1Genomic Context describing neighboring genes Neighboring gene macoilin-1 Neighboring gene nuclear receptor binding protein 1 Neighboring gene zinc finger protein 106b Neighboring gene churchill domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066839.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    8342741..8354784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018694981.2 → XP_018550497.1  LOW QUALITY PROTEIN: calpain-3b

    UniProtKB/TrEMBL
    A0A4W6F3X2, A0AAJ7Q9N9
    Related
    ENSLCAP00010074543.1, ENSLCAT00010080670.1
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases