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dnajc25 DnaJ (Hsp40) homolog, subfamily C , member 25 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108895493, updated on 10-Apr-2024

Summary

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Gene symbol
dnajc25
Gene description
DnaJ (Hsp40) homolog, subfamily C , member 25
See related
EnsemblRapid:ENSLCAG00010002598
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See dnajc25 in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
5
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG9 NC_066841.1 (19459057..19466410, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365651.1 (223381..230713, complement)

Linkage Group LG9 - NC_066841.1Genomic Context describing neighboring genes Neighboring gene rab9 effector protein with kelch motifs Neighboring gene spindlin-1 Neighboring gene GTPase IMAP family member 8 Neighboring gene GTPase IMAP family member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily C member 25
Names
DnaJ heat shock protein family (Hsp40) member C25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066841.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    19459057..19466410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018694337.2 → XP_018549853.1  dnaJ homolog subfamily C member 25

    UniProtKB/TrEMBL
    A0A4W6C0J4
    Related
    ENSLCAP00010079136.1, ENSLCAT00010072724.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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