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chrna1 cholinergic receptor, nicotinic, alpha 1 (muscle) [ Lates calcarifer (barramundi perch) ]

Gene ID: 108895162, updated on 10-Apr-2024

Summary

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Gene symbol
chrna1
Gene description
cholinergic receptor, nicotinic, alpha 1 (muscle)
See related
EnsemblRapid:ENSLCAG00010001403
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See chrna1 in Genome Data Viewer
Location:
chromosome: LG16_LG22
Exon count:
10
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG16_LG22 NC_066848.1 (17077706..17091684, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365598.1 (299279..313263, complement)

Linkage Group LG16_LG22 - NC_066848.1Genomic Context describing neighboring genes Neighboring gene homeobox protein Hox-D9b Neighboring gene homeobox protein Hox-D11b-like Neighboring gene uncharacterized LOC108895170 Neighboring gene lunapark, ER junction formation factor Neighboring gene cadherin 11, type 2, OB-cadherin (osteoblast) Neighboring gene uncharacterized LOC108872913

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066848.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    17077706..17091684 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018693796.2 → XP_018549312.1  acetylcholine receptor subunit alpha

    UniProtKB/TrEMBL
    A0A4W6BND1, A0A4W6BT34
    Related
    ENSLCAP00010002530.1, ENSLCAT00010002618.2
Nucleotide Protein
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Gene LinkOut

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