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itga9 integrin, alpha 9 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108894382, updated on 1-Aug-2024

Summary

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Gene symbol
itga9
Gene description
integrin, alpha 9
See related
EnsemblRapid:ENSLCAG00010020872
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See itga9 in Genome Data Viewer
Location:
chromosome: LG16_LG22
Exon count:
30
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG16_LG22 NC_066848.1 (5133587..5179454, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365410.1 (150104..195991)

Linkage Group LG16_LG22 - NC_066848.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 6 Neighboring gene uncharacterized LOC108894393 Neighboring gene golgin A4 Neighboring gene potassium channel, subfamily K, member 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-9
Names
integrin subunit alpha 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066848.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    5133587..5179454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018693017.2 → XP_018548533.1  integrin alpha-9 isoform X1

    UniProtKB/TrEMBL
    A0A4W6F456, A0AAJ7VDP0
    Related
    ENSLCAP00010045249.2, ENSLCAT00010046359.2

  2. XM_018693018.2 → XP_018548534.1  integrin alpha-9 isoform X2

    UniProtKB/TrEMBL
    A0A4W6F456, A0AAJ7VDP1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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