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tubgcp4 tubulin gamma complex component 4 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108894237, updated on 1-Aug-2024

Summary

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Gene symbol
tubgcp4
Gene description
tubulin gamma complex component 4
See related
EnsemblRapid:ENSLCAG00010003857
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See tubgcp4 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
19
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG2 NC_066834.1 (12645016..12655352)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365395.1 (331088..341369)

Linkage Group LG2 - NC_066834.1Genomic Context describing neighboring genes Neighboring gene cocaine- and amphetamine-regulated transcript-like Neighboring gene cocaine- and amphetamine-regulated transcript 3 Neighboring gene CDKN2A interacting protein Neighboring gene tumor protein p53 binding protein, 1 Neighboring gene uncharacterized LOC108894197 Neighboring gene microtubule-associated protein 1Aa Neighboring gene diphosphoinositol pentakisphosphate kinase 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables gamma-tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule minus-end binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spindle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in equatorial microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of gamma-tubulin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-tubulin complex component 4
Names
tubulin, gamma complex associated protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066834.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    12645016..12655352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018692830.2 → XP_018548346.1  gamma-tubulin complex component 4 isoform X2

    UniProtKB/TrEMBL
    A0A4W6C2Q2, A0AAJ7VDP5

  2. XM_018692829.2 → XP_018548345.1  gamma-tubulin complex component 4 isoform X1

    UniProtKB/TrEMBL
    A0A4W6C2Q2, A0A4W6C8M5
    Related
    ENSLCAP00010008004.1, ENSLCAT00010008196.2
Nucleotide Protein
Heading Accession and Version

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