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dctpp1 dCTP pyrophosphatase 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108893079, updated on 1-Aug-2024

Summary

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Gene symbol
dctpp1
Gene description
dCTP pyrophosphatase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See dctpp1 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
1
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG5 NC_066837.1 (7532167..7533268)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365377.1 (600895..601990, complement)

Linkage Group LG5 - NC_066837.1Genomic Context describing neighboring genes Neighboring gene FHF complex subunit HOOK interacting protein 1Aa Neighboring gene glutamyl-tRNA(Gln) amidotransferase, subunit B Neighboring gene F-box and WD repeat domain containing 7 Neighboring gene transmembrane protein 154

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleoside triphosphate diphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleoside triphosphate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066837.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    7532167..7533268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018690886.2 → XP_018546402.2  LOW QUALITY PROTEIN: glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial

    UniProtKB/TrEMBL
    A0AAJ7Q4H9
Nucleotide Protein
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Gene LinkOut

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