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pomt2 protein-O-mannosyltransferase 2 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108892589, updated on 10-Apr-2024

Summary

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Gene symbol
pomt2
Gene description
protein-O-mannosyltransferase 2
See related
EnsemblRapid:ENSLCAG00010019551
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See pomt2 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
21
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG19 NC_066851.1 (10378255..10385327, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364990.1 (1242706..1249778, complement)

Linkage Group LG19 - NC_066851.1Genomic Context describing neighboring genes Neighboring gene synapse differentiation-inducing gene protein 1-like Neighboring gene lin-52 DREAM MuvB core complex component Neighboring gene visual system homeobox 2 Neighboring gene latent-transforming growth factor beta-binding protein 2 Neighboring gene apoptosis resistant E3 ubiquitin protein ligase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066851.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    10378255..10385327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018690241.1 → XP_018545757.1  protein O-mannosyl-transferase 2

    UniProtKB/TrEMBL
    A0A4W6EUZ0, A0A4W6EVT6
    Related
    ENSLCAP00010041807.1, ENSLCAT00010042849.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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