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c4b complement C4B (Chido/Rodgers blood group) [ Lates calcarifer (barramundi perch) ]

Gene ID: 108891077, updated on 10-Oct-2024

Summary

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Gene symbol
c4b
Gene description
complement C4B (Chido/Rodgers blood group)
See related
EnsemblRapid:ENSLCAG00010008831
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
zebrafish all
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Genomic context

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See c4b in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
41
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG15 NC_066847.1 (22386982..22401253)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363830.1 (10055436..10069680, complement)

Linkage Group LG15 - NC_066847.1Genomic Context describing neighboring genes Neighboring gene retinoid x receptor, beta b Neighboring gene C-type mannose receptor 2 Neighboring gene tenascin XBa Neighboring gene steroid 21-hydroxylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in complement activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
complement C4-B
Names
complement 4B (Chido blood group)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066847.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    22386982..22401253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051075884.1 → XP_050931841.1  complement C4-B

    UniProtKB/TrEMBL
    A0AAJ8DUC8
    Related
    ENSLCAP00010018991.2, ENSLCAT00010019399.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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