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mrtfba myocardin related transcription factor Ba [ Lates calcarifer (barramundi perch) ]

Gene ID: 108889138, updated on 10-Oct-2024

Summary

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Gene symbol
mrtfba
Gene description
myocardin related transcription factor Ba
See related
EnsemblRapid:ENSLCAG00010000913
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
mkl2; mrtfb
Orthologs
human zebrafish all
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Genomic context

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See mrtfba in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
20
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG23 NC_066855.1 (3894080..3923764)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364314.1 (642234..666431)

Linkage Group LG23 - NC_066855.1Genomic Context describing neighboring genes Neighboring gene calcineurin-like phosphoesterase domain containing 1 Neighboring gene excision repair cross-complementation group 4 Neighboring gene uncharacterized LOC108889139 Neighboring gene uncharacterized LOC127139212 Neighboring gene UBA-like domain containing 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in smooth muscle cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myocardin-related transcription factor B
Names
MKL1/myocardin like 2
myocardin related transcription factor B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066855.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    3894080..3923764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018685496.2 → XP_018541012.1  myocardin-related transcription factor B isoform X1

    UniProtKB/TrEMBL
    A0A4W6BT08, A0AAJ8DKR1
    Related
    ENSLCAP00010065632.1, ENSLCAT00010079354.1

  2. XM_051066404.1 → XP_050922361.1  myocardin-related transcription factor B isoform X1

    UniProtKB/TrEMBL
    A0AAJ8DKR1

  3. XM_018685497.2 → XP_018541013.1  myocardin-related transcription factor B isoform X2

    UniProtKB/TrEMBL
    A0A4W6BT08, A0AAJ7PX93
    Related
    ENSLCAP00010077532.1, ENSLCAT00010080453.1

RNA

  1. XR_007809225.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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