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plecb plectin b [ Lates calcarifer (barramundi perch) ]

Gene ID: 108887708, updated on 10-Oct-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
See related
EnsemblRapid:ENSLCAG00010016233
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
49
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG15 NC_066847.1 (28849457..29015340, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363830.1 (3460480..3607237)

Linkage Group LG15 - NC_066847.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 52, riboflavin transporter, member 3-B Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene uncharacterized LOC108887839 Neighboring gene hepcidin-like Neighboring gene hepcidin-like Neighboring gene hepcidin Neighboring gene hepcidin-like Neighboring gene hepcidin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066847.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    28849457..29015340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051075819.1 → XP_050931776.1  plectin isoform X21

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  2. XM_051075818.1 → XP_050931775.1  plectin isoform X20

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  3. XM_051075828.1 → XP_050931785.1  plectin isoform X16

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  4. XM_051075823.1 → XP_050931780.1  plectin isoform X13

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  5. XM_051075826.1 → XP_050931783.1  plectin isoform X14

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  6. XM_051075822.1 → XP_050931779.1  plectin isoform X11

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  7. XM_051075825.1 → XP_050931782.1  plectin isoform X18

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  8. XM_051075821.1 → XP_050931778.1  plectin isoform X17

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  9. XM_051075824.1 → XP_050931781.1  plectin isoform X19

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  10. XM_051075820.1 → XP_050931777.1  plectin isoform X12

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  11. XM_051075803.1 → XP_050931760.1  plectin isoform X15

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  12. XM_051075814.1 → XP_050931771.1  plectin isoform X19

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  13. XM_051075798.1 → XP_050931755.1  plectin isoform X12

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  14. XM_051075813.1 → XP_050931770.1  plectin isoform X18

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  15. XM_051075809.1 → XP_050931766.1  plectin isoform X17

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  16. XM_051075794.1 → XP_050931751.1  plectin isoform X9

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  17. XM_051075802.1 → XP_050931759.1  plectin isoform X14

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  18. XM_051075797.1 → XP_050931754.1  plectin isoform X11

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  19. XM_051075793.1 → XP_050931750.1  plectin isoform X8

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  20. XM_051075790.1 → XP_050931747.1  plectin isoform X6

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  21. XM_051075805.1 → XP_050931762.1  plectin isoform X15

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  22. XM_051075817.1 → XP_050931774.1  plectin isoform X19

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  23. XM_051075800.1 → XP_050931757.1  plectin isoform X12

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  24. XM_051075816.1 → XP_050931773.1  plectin isoform X18

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  25. XM_051075812.1 → XP_050931769.1  plectin isoform X17

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  26. XM_051075796.1 → XP_050931753.1  plectin isoform X9

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  27. XM_051075815.1 → XP_050931772.1  plectin isoform X14

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  28. XM_051075810.1 → XP_050931767.1  plectin isoform X11

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  29. XM_051075806.1 → XP_050931763.1  plectin isoform X8

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  30. XM_051075791.1 → XP_050931748.1  plectin isoform X6

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  31. XM_051075804.1 → XP_050931761.1  plectin isoform X16

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  32. XM_051075799.1 → XP_050931756.1  plectin isoform X13

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  33. XM_051075795.1 → XP_050931752.1  plectin isoform X10

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  34. XM_051075792.1 → XP_050931749.1  plectin isoform X7

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  35. XM_051075789.1 → XP_050931746.1  plectin isoform X5

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  36. XM_051075811.1 → XP_050931768.1  plectin isoform X15

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  37. XM_051075829.1 → XP_050931786.1  plectin isoform X19

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  38. XM_051075807.1 → XP_050931764.1  plectin isoform X12

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  39. XM_051075808.1 → XP_050931765.1  plectin isoform X15

    UniProtKB/TrEMBL
    A0AAJ8DUQ0

  40. XM_051075830.1 → XP_050931787.1  plectin isoform X22

    UniProtKB/TrEMBL
    A0A4W6EAM9
    Related
    ENSLCAP00010034686.2, ENSLCAT00010035500.2

  41. XM_051075833.1 → XP_050931790.1  plectin isoform X25

    UniProtKB/TrEMBL
    A0AAJ8BEY6
    Related
    ENSLCAP00010034699.2, ENSLCAT00010035513.2

  42. XM_051075834.1 → XP_050931791.1  plectin isoform X27

    UniProtKB/TrEMBL
    A0AAJ8BGF5
    Related
    ENSLCAP00010034689.2, ENSLCAT00010035503.2

  43. XM_051075786.1 → XP_050931743.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0AAJ8BEU6

  44. XM_018683223.2 → XP_018538739.1  plectin isoform X3

    UniProtKB/TrEMBL
    A0A4W6E7Y2, A0AAJ7PU32

  45. XM_051075787.1 → XP_050931744.1  plectin isoform X2

    UniProtKB/TrEMBL
    A0A4W6E9L4
    Related
    ENSLCAP00010034726.1, ENSLCAT00010035540.2

  46. XM_051075788.1 → XP_050931745.1  plectin isoform X4

    UniProtKB/TrEMBL
    A0AAJ8BEV5
    Related
    ENSLCAP00010034690.2, ENSLCAT00010035504.2

  47. XM_051075835.1 → XP_050931792.1  plectin isoform X28

    UniProtKB/TrEMBL
    A0AAJ8BFY1

  48. XM_051075832.1 → XP_050931789.1  plectin isoform X24

    UniProtKB/TrEMBL
    A0AAJ8BH49

  49. XM_051075831.1 → XP_050931788.1  plectin isoform X23

    UniProtKB/TrEMBL
    A0A4W6E824

  50. XM_018683267.2 → XP_018538783.1  plectin isoform X26

    UniProtKB/TrEMBL
    A0A4W6E7X3, A0AAJ7PU52
    Related
    ENSLCAP00010034670.2, ENSLCAT00010035484.2
Nucleotide Protein
Heading Accession and Version

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