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LOC108886805 heparan sulfate glucosamine 3-O-sulfotransferase 2 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108886805, updated on 10-Apr-2024

Summary

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Gene symbol
LOC108886805
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 2
See related
EnsemblRapid:ENSLCAG00010000639
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
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Genomic context

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See LOC108886805 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
2
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG23 NC_066855.1 (8133527..8139835, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364047.1 (927550..933878, complement)

Linkage Group LG23 - NC_066855.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 31 Neighboring gene component of oligomeric golgi complex 7 Neighboring gene leucine rich repeat containing 4Bb Neighboring gene testicular acid phosphatase homolog Neighboring gene myosin-binding protein C, fast-type-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066855.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    8133527..8139835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018681855.2 → XP_018537371.1  heparan sulfate glucosamine 3-O-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A4W6BRF4
    Related
    ENSLCAP00010001029.1, ENSLCAT00010001087.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases