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slc25a20 solute carrier family 25 member 20 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108886507, updated on 10-Apr-2024

Summary

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Gene symbol
slc25a20
Gene description
solute carrier family 25 member 20
See related
EnsemblRapid:ENSLCAG00010019082
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See slc25a20 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
10
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG12 NC_066844.1 (23261458..23267042, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364027.1 (760064..765623, complement)

Linkage Group LG12 - NC_066844.1Genomic Context describing neighboring genes Neighboring gene msx2-interacting protein Neighboring gene protein kinase, cAMP-dependent, regulatory, type II, alpha, B Neighboring gene NCK-interacting protein with SH3 domain Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066844.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    23261458..23267042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018681399.2 → XP_018536915.1  mitochondrial carnitine/acylcarnitine carrier protein

    UniProtKB/TrEMBL
    A0A4W6ES52
    Related
    ENSLCAP00010040788.2, ENSLCAT00010041761.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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