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thumpd3 THUMP domain containing 3 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108886453, updated on 10-Apr-2024

Summary

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Gene symbol
thumpd3
Gene description
THUMP domain containing 3
See related
EnsemblRapid:ENSLCAG00010026625
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See thumpd3 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
10
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG12 NC_066844.1 (22665249..22672888)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364027.1 (163855..171494)

Linkage Group LG12 - NC_066844.1Genomic Context describing neighboring genes Neighboring gene oxytocin receptor a Neighboring gene RAD18 E3 ubiquitin protein ligase Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene prostacyclin synthase Neighboring gene potassium voltage-gated channel subfamily B member 1 Neighboring gene retinol dehydrogenase 10-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066844.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    22665249..22672888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018681327.1 → XP_018536843.1  THUMP domain-containing protein 3

    UniProtKB/TrEMBL
    A0A4W6G0Q0
    Related
    ENSLCAP00010057028.1, ENSLCAT00010058579.2

  2. XM_018681329.2 → XP_018536845.1  THUMP domain-containing protein 3

    UniProtKB/TrEMBL
    A0A4W6G0Q0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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