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gpaa1 glycosylphosphatidylinositol anchor attachment 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108883397, updated on 1-Aug-2024

Summary

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Gene symbol
gpaa1
Gene description
glycosylphosphatidylinositol anchor attachment 1
See related
EnsemblRapid:ENSLCAG00010009363
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See gpaa1 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
13
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG4 NC_066836.1 (10915762..10920963)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363888.1 (2777861..2782829)

Linkage Group LG4 - NC_066836.1Genomic Context describing neighboring genes Neighboring gene protein kinase, cAMP-dependent, catalytic, beta b Neighboring gene SHANK-associated RH domain interacting protein Neighboring gene exosome component 4 Neighboring gene alanine aminotransferase 2 Neighboring gene DEAH (Asp-Glu-Ala-His) box helicase 30 Neighboring gene chymotrypsin-like elastase family member 3B Neighboring gene WRN helicase interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in attachment of GPI anchor to protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GPI-anchor transamidase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycosylphosphatidylinositol anchor attachment 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066836.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    10915762..10920963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018676477.2 → XP_018531993.1  glycosylphosphatidylinositol anchor attachment 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A4W6D4V0, A0AAJ7LTV3

  2. XM_018676478.2 → XP_018531994.1  glycosylphosphatidylinositol anchor attachment 1 protein isoform X2

    UniProtKB/TrEMBL
    A0A4W6D4V0, A0AAJ7LTV4
    Related
    ENSLCAP00010019877.2, ENSLCAT00010020302.2
Nucleotide Protein
Heading Accession and Version

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