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bend5 BEN domain containing 5 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108881381, updated on 1-Aug-2024

Summary

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Gene symbol
bend5
Gene description
BEN domain containing 5
See related
EnsemblRapid:ENSLCAG00010027001
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See bend5 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
7
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG17 NC_066849.1 (12203899..12217921, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363859.1 (6335282..6349310)

Linkage Group LG17 - NC_066849.1Genomic Context describing neighboring genes Neighboring gene deoxynucleotidyltransferase, terminal, interacting protein 2 Neighboring gene spermatogenesis associated 6 Neighboring gene AGBL carboxypeptidase 4 Neighboring gene ELAV like neuron-specific RNA binding protein 4 Neighboring gene DMRT-like family A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEN domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066849.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    12203899..12217921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018673362.2 → XP_018528878.1  BEN domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A4W6G558
    Related
    ENSLCAP00010057900.1, ENSLCAT00010059465.2

  2. XM_018673363.2 → XP_018528879.1  BEN domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A4W6G4F8, A0AAJ7PK06

  3. XM_018673364.1 → XP_018528880.1  BEN domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A4W6G4F8, A0AAJ7PK06
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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