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guk1b guanylate kinase 1b [ Lates calcarifer (barramundi perch) ]

Gene ID: 108881319, updated on 10-Apr-2024

Summary

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Gene symbol
guk1b
Gene description
guanylate kinase 1b
See related
EnsemblRapid:ENSLCAG00010023296
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
zebrafish all
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Genomic context

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See guk1b in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
7
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG17 NC_066849.1 (13794447..13798385)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363859.1 (4754784..4760345, complement)

Linkage Group LG17 - NC_066849.1Genomic Context describing neighboring genes Neighboring gene DNA methyltransferase 1 associated protein 1 Neighboring gene ring finger protein 220b Neighboring gene obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF a Neighboring gene obscurin-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanylate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in purine nucleotide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
guanylate kinase 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066849.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    13794447..13798385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018673248.2 → XP_018528764.1  guanylate kinase 1b

    UniProtKB/TrEMBL
    A0A4W6FH82, A0A4W6FIB4
    Related
    ENSLCAP00010049982.1, ENSLCAT00010051254.2
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases