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cdr2l cerebellar degeneration-related protein 2-like [ Lates calcarifer (barramundi perch) ]

Gene ID: 108881042, updated on 10-Apr-2024

Summary

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Gene symbol
cdr2l
Gene description
cerebellar degeneration-related protein 2-like
See related
EnsemblRapid:ENSLCAG00010032187
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See cdr2l in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
5
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG11 NC_066843.1 (14131877..14141429)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363857.1 (3167541..3175776)

Linkage Group LG11 - NC_066843.1Genomic Context describing neighboring genes Neighboring gene butyrophilin subfamily 3 member A3 Neighboring gene uncharacterized LOC108881045 Neighboring gene RecQ helicase-like 5 Neighboring gene Rho GDP dissociation inhibitor (GDI) alpha Neighboring gene Aly/REF export factor Neighboring gene MAPK regulated corepressor interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cerebellar degeneration-related protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066843.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    14131877..14141429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018672813.2 → XP_018528329.1  cerebellar degeneration-related protein 2-like

    UniProtKB/TrEMBL
    A0A4W6BPP8
    Related
    ENSLCAP00010072901.1, ENSLCAT00010090173.1
Nucleotide Protein
Heading Accession and Version

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