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alkbh7 alkB homolog 7 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108880715, updated on 10-Apr-2024

Summary

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Gene symbol
alkbh7
Gene description
alkB homolog 7
See related
EnsemblRapid:ENSLCAG00010016827
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See alkbh7 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
4
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG11 NC_066843.1 (13260827..13262842, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363857.1 (2295861..2298173, complement)

Linkage Group LG11 - NC_066843.1Genomic Context describing neighboring genes Neighboring gene GDP-L-fucose synthase Neighboring gene general transcription factor IIF, polypeptide 1 Neighboring gene calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, a Neighboring gene immediate early response 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066843.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    13260827..13262842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018672376.2 → XP_018527892.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial

    UniProtKB/TrEMBL
    A0A4W6EB05, A0A4W6EFH6
    Related
    ENSLCAP00010035887.1, ENSLCAT00010036729.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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