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hs3st1l2 heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108878405, updated on 10-Apr-2024

Summary

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Gene symbol
hs3st1l2
Gene description
heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2
See related
EnsemblRapid:ENSLCAG00010030046
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
zebrafish all
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Genomic context

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See hs3st1l2 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
3
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG13 NC_066845.1 (23357878..23380393)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367222.1 (754720..782039, complement)

Linkage Group LG13 - NC_066845.1Genomic Context describing neighboring genes Neighboring gene nuclear factor 7, brain-like Neighboring gene nuclear factor 7, brain-like Neighboring gene nuclear factor 7, brain Neighboring gene nuclear factor 7, brain-like Neighboring gene histone H2A.V Neighboring gene transcriptional activator protein Pur-beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066845.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    23357878..23380393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018669064.2 → XP_018524580.1  heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2

    UniProtKB/TrEMBL
    A0A4W6FLT5
    Related
    ENSLCAP00010076246.1, ENSLCAT00010083803.1
Nucleotide Protein
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Gene LinkOut

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