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tent2 terminal nucleotidyltransferase 2 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108878149, updated on 1-Aug-2024

Summary

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Gene symbol
tent2
Gene description
terminal nucleotidyltransferase 2
See related
EnsemblRapid:ENSLCAG00010028114
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
papd4
Orthologs
human zebrafish all
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Genomic context

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See tent2 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
15
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG13 NC_066845.1 (11424509..11430777, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367222.1 (12704233..12710703)

Linkage Group LG13 - NC_066845.1Genomic Context describing neighboring genes Neighboring gene metaxin 3 Neighboring gene cardiomyopathy associated 5 Neighboring gene homer scaffold protein 1b Neighboring gene junction-mediating and -regulatory protein Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transfer RNA glutamine (anticodon CUG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A) RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(A) RNA polymerase GLD2
Names
poly(A) RNA polymerase D4, non-canonical

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066845.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    11424509..11430777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018668534.2 → XP_018524050.1  poly(A) RNA polymerase GLD2 isoform X2

    UniProtKB/TrEMBL
    A0A4W6GAW3, A0AAJ7PGS0

  2. XM_018668531.2 → XP_018524047.1  poly(A) RNA polymerase GLD2 isoform X1

    UniProtKB/TrEMBL
    A0A4W6GAW3, A0A4W6GBX8
    Related
    ENSLCAP00010060433.2, ENSLCAT00010062053.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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